SangerAlignment Level

SangerContig Level

SangerRead Level

Basic Information:

  • Output Directory : /Users/camilogarcia/Documents/Teaching/BiologyCourses/BI0487/Lectures/biocomp-book/chs-challenges-demos/data/sanger-processed/SangerAlignment/455_WT_/455_WT_rpoB_1_F
  • Input Directory : data/sanger-seqs/rpoB//.
  • Input Filename : 455_WT_rpoB_1_F.ab1
  • Read Feature : Forward Read

DNA Seqence

Primary Sequence

Secondary Sequence

Phred Quality Scores

Amino Acids Sequence

Amino Acids Sequence frameshit 0

Amino Acids Sequence frameshit 1

Amino Acids Sequence frameshit 2

Quality Trimming

  • Trimming Method: Method 2 ‘Logarithmic Scale Sliding Window Trimming’
  • M2 Cutoff Quality Score: 33
  • M2 Cutoff Quality Score: 5
  • Raw Sequence Length: 1336
  • Trimmed Sequence Length: 1022
  • Trimmed Start Point: 16
  • Trimmed End Point: 1038
  • Raw Mean Quality Score: 43.3128743
  • Trimmed Mean Quality Score: 55.6135029
  • Raw Min Quality Score: 2
  • Trimmed Min Quality Score: 6
  • Remaining Read Ratio: 76.5 %

Chromatogram

  • Signal Ratio Cutoff: 0.33
  • Base Number Per Row: 100
  • Height Per Row: 200
  • Show Trimmed Region: TRUE 
## Chromatogram saved to /Users/camilogarcia/Documents/Teaching/BiologyCourses/BI0487/Lectures/biocomp-book/chs-challenges-demos/data/sanger-processed/SangerAlignment/455_WT_/455_WT_rpoB_1_F/Chromatogram.pdf in the current working directory

Click Here to Open Chromatogram in New Page




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